More from Bob Gaines:
It is pretty simple to figure what wire to use at the ignition switch for full 12 volt power. There is a short wire with a bullet connector that comes off the ignition switch that your tach wire plugs into . You tap into the wire someplace between the ignition switch and the bullet connector and run that wire out to the pertronix. You are all about day 2 modifications so the extra wire should not offend your sensibilities. I would run a black wire so that it blends in more with the existing harness but that is just me. If you want to get creative you can tape wrap the extra wire into the harness at the firewall and let it exit out closer to the coil so that it is harder to distinguish as extra. Best of luck on how ever you decide to solve your problem.
Yes the coil was factory installed on the passenger side. Yes I can see that you are getting power from the coil terminal. I am familiar with your style coil and it has a internal resister so it can be used with the stock resistor wire that steps down the voltage to the coil or with a modified wiring with full 12 volts from the ignition switch bypassing the resister wire wrapped inside the stock wiring harness. The resister inside the aftermarket coil steps down the voltage inside before it gets to the windings. The problem is that if you have a stock wiring harness with the stock resistor wire wrapped inside then your aftermarket coil terminal is getting less then the full 12 volts and consequently since that is where you are getting power for the module is suppling less voltage then what the module needs to work properly. As has been said before sometimes the module will work properly at least for a while with the lower voltage and sometimes it will act up and stop running similar to the symptoms you describe.
By not doing what Pertronix explains in the instruction to do (full 12 volts to the module) it is a roulette wheel of chance of how long it will work without problems. It may work for a good long time or it may fail in a month. The possible failure is because you have it connected to the coil power which is not a full 12 volts. Murphy's law dictates that it will fail at a inopportune moment. I would run the dedicated 12 volt wire to the module as the instructions say is required for problem free operation.That way you take the roulette wheel out of the equation.
I did not want to become the Pertronix answer guy but when I see suspect incorrect information it tends to bother me. I went to the Pertronix website to check about the coil. The ignitor 1 requires a 1.5 ohm or more coil. The ignitor 2 requires a 0.45 ohm coil or more. I must have missed it but I did not find any information on the ignitor 3 . The Ford yellow top coil falls within the Pertronix parameters. That is if it is working properly. Most aftermarket coils fall into compatible category too. I think there is a Pertronix flamethrower coil that will match up with their ignitor modules. Something that has not been mentioned but I was reminded of when going over the installation info is that the spark plug wires must be resistance type wire . Interference from the solid core wire will damage the module. That reminded me also of the urban legend that 289 hipo in a GT350 was supposed to have solid core SX wire. That is false . The regular production GT350 used spark plug resistance wire that was marked "resistance wire" form the factory. This has been documented by vintage factory pictures.
It is pretty simple to figure what wire to use at the ignition switch for full 12 volt power. There is a short wire with a bullet connector that comes off the ignition switch that your tach wire plugs into . You tap into the wire someplace between the ignition switch and the bullet connector and run that wire out to the pertronix. You are all about day 2 modifications so the extra wire should not offend your sensibilities. I would run a black wire so that it blends in more with the existing harness but that is just me. If you want to get creative you can tape wrap the extra wire into the harness at the firewall and let it exit out closer to the coil so that it is harder to distinguish as extra. Best of luck on how ever you decide to solve your problem.
Yes the coil was factory installed on the passenger side. Yes I can see that you are getting power from the coil terminal. I am familiar with your style coil and it has a internal resister so it can be used with the stock resistor wire that steps down the voltage to the coil or with a modified wiring with full 12 volts from the ignition switch bypassing the resister wire wrapped inside the stock wiring harness. The resister inside the aftermarket coil steps down the voltage inside before it gets to the windings. The problem is that if you have a stock wiring harness with the stock resistor wire wrapped inside then your aftermarket coil terminal is getting less then the full 12 volts and consequently since that is where you are getting power for the module is suppling less voltage then what the module needs to work properly. As has been said before sometimes the module will work properly at least for a while with the lower voltage and sometimes it will act up and stop running similar to the symptoms you describe.
By not doing what Pertronix explains in the instruction to do (full 12 volts to the module) it is a roulette wheel of chance of how long it will work without problems. It may work for a good long time or it may fail in a month. The possible failure is because you have it connected to the coil power which is not a full 12 volts. Murphy's law dictates that it will fail at a inopportune moment. I would run the dedicated 12 volt wire to the module as the instructions say is required for problem free operation.That way you take the roulette wheel out of the equation.
I did not want to become the Pertronix answer guy but when I see suspect incorrect information it tends to bother me. I went to the Pertronix website to check about the coil. The ignitor 1 requires a 1.5 ohm or more coil. The ignitor 2 requires a 0.45 ohm coil or more. I must have missed it but I did not find any information on the ignitor 3 . The Ford yellow top coil falls within the Pertronix parameters. That is if it is working properly. Most aftermarket coils fall into compatible category too. I think there is a Pertronix flamethrower coil that will match up with their ignitor modules. Something that has not been mentioned but I was reminded of when going over the installation info is that the spark plug wires must be resistance type wire . Interference from the solid core wire will damage the module. That reminded me also of the urban legend that 289 hipo in a GT350 was supposed to have solid core SX wire. That is false . The regular production GT350 used spark plug resistance wire that was marked "resistance wire" form the factory. This has been documented by vintage factory pictures.
I don't know how many times I have heard the Pertronix problem stories and getting power at the coil is a root cause on the vast majority.